rs45706372 SNP Detail

Summary

• ID
  rs45706372
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:100821035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCG AACTCTGGAG ACAGTAAGTT
  W
  TTTTTCTTTT CCTGTGCATG ACCTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148928128	ENSMUSSNP2963432	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
ss321627408	CHEV_5_101102188	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45706372					SNP	A	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100821035 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Coq2	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase			Intron
				Noncoding-Transcript-Variant
Cpgi16113	CpG island 16113			538 bp proximal
Gm15777	predicted gene 15777			within coordinates
Rr615537	regulatory region 615537			1454 bp distal
Rr615538	regulatory region 615538			1560 bp distal
Rr615539	regulatory region 615539			459 bp distal
Rr615540	regulatory region 615540			254 bp proximal
Rr615541	regulatory region 615541			1085 bp proximal
Rr615542	regulatory region 615542			1105 bp proximal
Rr615543	regulatory region 615543			1965 bp proximal
Tssr52113	transcription start site region 52113			1061 bp downstream