rs45707401 SNP Detail

Summary

• ID
  rs45707401
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4299668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCGATGCT CAGTAACACC
  TTCTTCACGC CCGACCCTGG GGCCTGCCCT GGTGCTTCTA CGTGGGGGCT GCCCCGCCGA
  CGACTCTGTC AGCTTCTCAC CACCTCCACG CCCGGATGCT GCTAGCGTCT CACGCTTCAG
  CTTTCGCCTG CGTCCGGTAT TCAATGCCTC AGTACAGTTC TTGCACTGCC AGATCAGCCG
  W
  TGCCGCCGTC GCAGCAGTCA CCACCGCCGA GCTGTCCGCC TGACACCAGT GCCTTTGACC
  CCACCAGCAC CATTGCGGGT GCGCTAACAG AAACAGTAAT CTCGGCACCT GCGGAATATT
  CTCTAGCTAG GCAAAGGCAT TTCTGGCAGC TGAGGGACCT TAGGAAGCAA AGTGCTTTAT
  GGTCTGGGTC CCTCTCACAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61075429	NES16047362	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	T	T	T	T	T	T	T	T	T	A	T
ss148556248	ENSMUSSNP4970068	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45707401					SNP	A	A	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61075429	NES16047362	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4299668 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20049	CpG island 20049	within coordinates
Cpgi20050	CpG island 20050	672 bp proximal
Gm49320	predicted gene, 49320	within coordinates
Gm63796	predicted gene, 63796	1309 bp upstream
Map2k7	mitogen-activated protein kinase kinase 7	1771 bp downstream
Rr658999	regulatory region 658999	1107 bp proximal
Tgfbr3l	transforming growth factor, beta receptor III-like	within coordinates
Tssr76110	transcription start site region 76110	1449 bp downstream
Tssr76111	transcription start site region 76111	1427 bp downstream
Tssr76112	transcription start site region 76112	1401 bp downstream
Tssr76113	transcription start site region 76113	209 bp downstream
Tssr76114	transcription start site region 76114	639 bp upstream
Tssr76115	transcription start site region 76115	765 bp upstream