rs45708109 SNP Detail

Summary

• ID
  rs45708109
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:15894035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAGGGTTA ACGAAAGTAC TCTAGTCTAG AAGGTTTATT
  TTGCTCTCAG TGCCAGCCAA TCTGGGCAGG ACCCTCGAAG AGGAGACCGA GGGTCCCAGA
  R
  GACCAATGCT ACAAGCCAGC AAATGCTGCC ACATCTCTGC CTGTTGGGGG GCGGGGGTGG
  AGGGGAGGGT GGGAGGGGGG CTGGGTGGGC ATTTTTAAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322108789	CHEV_7_16745459	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs45708109					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:15894035 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18359	CpG island 18359	800 bp distal
Rr155078	regulatory region 155078	1166 bp proximal
Rr160786	regulatory region 160786	1966 bp proximal
Rr164335	regulatory region 164335	547 bp proximal
Slc8a2	solute carrier family 8 (sodium/calcium exchanger), member 2	within coordinates
Tssr64587	transcription start site region 64587	74 bp upstream
Tssr64588	transcription start site region 64588	85 bp upstream