rs45708291 SNP Detail

Summary

• ID
  rs45708291
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21424730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCA GCTTTTTAAT AATAGAAATG
  Y
  TATGATATTT CTCTTGAGTG TCCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52314526	NES15371725	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	T	T	T	T		C	T	C	C		T
ss137298220	ENSMUSSNP6791101	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C					T
ss323931438	CHEV_12_21380590	CHEVERUD	SCREENING_POP	f	SNP									T					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45708291					SNP	T	C	C	C	T	T	T	T	T	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52314526	NES15371725	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21424730 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	1097 bp upstream
Cpgi4477	CpG island 4477	522 bp distal
Gm49586	predicted gene, 49586	383 bp downstream
Rr463712	regulatory region 463712	1290 bp distal
Rr463713	regulatory region 463713	1046 bp distal
Rr463714	regulatory region 463714	1165 bp distal
Rr463715	regulatory region 463715	5 bp distal
Rr463716	regulatory region 463716	985 bp distal
Rr463717	regulatory region 463717	497 bp distal
Tssr112932	transcription start site region 112932	950 bp downstream
Tssr112933	transcription start site region 112933	472 bp downstream
Tssr115856	transcription start site region 115856	1237 bp upstream
Tssr115857	transcription start site region 115857	1211 bp upstream
Tssr115858	transcription start site region 115858	1183 bp upstream
Tssr115859	transcription start site region 115859	1137 bp upstream
Tssr115860	transcription start site region 115860	1112 bp upstream