rs45709126 SNP Detail

Summary

• ID
  rs45709126
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84823401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTATTGTGA TTAGTGAGTG CCGCTTGAGC GGAGTCAGTA
  ACTTGTTGGG TTTTTTTCCA ACCATCATGG CCTTATCCGT CCCCGATTTC TCAGTGTCTT
  Y
  AATCTGTGAT AGATGTTTAT GGAGAAAAAG CAAATCTGGC CTATTGTATA GAAATCCCTA
  TTTTGTGTGC TCCGCGTGCT CCAGCTTTTG GGGTGGTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60642565	NES16272405	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T		C	T	T	C		T
ss145371896	ENSMUSSNP5576809	ENSEMBL	ENSEMBL_Sanger	f	SNP								T
ss322747566	CHEV_8_86620671	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45709126					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60642565	NES16272405	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84823401 () rs orientation: forward

Symbol	Name	Function Class
Dcaf15	DDB1 and CUL4 associated factor 15	300 bp downstream
Gm39210	predicted gene, 39210	1268 bp upstream
Rfx1	regulatory factor X, 1 (influences HLA class II expression)	within coordinates