rs45709340 SNP Detail

Summary

• ID
  rs45709340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46505603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGGGAG AGGGGCCACT
  GGGCTCCTTC CTTTAATGAC TTGGGACTTT GGCCCTGGAA GGGATAGAAG GGGTAATAGG
  ATTAGAAGGG GAAGGAGGGC TAGATCTGAA AACCCAGGAG TTTGAATTCC TAAATCCAGT
  GGTGGTTATG GATCCTGGGG TTTGAGAAGG GCTGTCTAAA TACATGGCCT CCTTGAGGAG
  Y
  GCTGGAACAC ACCCACCTTC CTGCACTGAA CTAGAGATTC CTTTAAACCC TTCTGAGCAC
  TGGGATTGCT GGCTGGCTCT CAATTCTGGA AGGTCCTCTT CTCTGCTAGC TGGTTAGTTG
  ACTGGTTGCT TTTTAAGCCA GGGTTTCTAT GTAGCCTTGC CTGACCTGGA ACTCACTGTA
  AACCAGGCTA GCCTGGAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MOLF/EiJ	MSM/Ms	PWD/PhJ
ss60312528	NES15816123	PERLEGEN	MM_PANEL2	f	SNP		T	T	C		C
ss146452638	ENSMUSSNP1090465	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MOLF/EiJ	MSM/Ms	PWD/PhJ
rs45709340					SNP	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312528	NES15816123	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46505603 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11005	CpG island 11005	1497 bp distal
Rr363443	regulatory region 363443	597 bp proximal
Rr370520	regulatory region 370520	883 bp upstream
Trim8	tripartite motif-containing 8	709 bp downstream
Tssr156777	transcription start site region 156777	1824 bp downstream
Tssr156778	transcription start site region 156778	1402 bp downstream
Tssr156779	transcription start site region 156779	1308 bp downstream
Tssr156780	transcription start site region 156780	985 bp downstream
Tssr156781	transcription start site region 156781	961 bp downstream
Tssr156782	transcription start site region 156782	855 bp downstream