rs45709546 SNP Detail

Summary

• ID
  rs45709546
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:118341234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAACACTC TCTGATACCG
  AGACGGGCAC AGGAAGTACA ACCGCTGACT TCTCAGAGGA AGCCTCAGTG CCGCTTCGCA
  GAGTTGAAAG ACAGACTGAA GAGAAAGAAG ATGAAGAATG GTAAGCCCAT CAATGTCAAA
  GACACTAGAA TCCAGAGCTG TGTGAACAGA CTCGAGAACT ACCCCCAGAT CATGGTGCCA
  W
  ATTCTCTGCT GACAGTATTT TTGAAGCGCC CCACCCCACC CCACCCCCCC CCCCCGCCGA
  CAATTGCCCA GACAGAATTG ACACTTGATA GTATATAATC TGCCTAATAA ATTTGATTGA
  AATTGTGACA TTTTCAAAGT TATTTCTAGT ATCTCAAATT AAGCTTTAAA GGGAGAGTTC
  CCTTTGATTC AGCTAAATCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52610946	NES15502349	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs45709546					SNP	A	T	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52610946	NES15502349	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:118341234 () rs orientation: forward

Symbol	Name	Function Class
Rr369642	regulatory region 369642	86 bp downstream
Rr387826	regulatory region 387826	1547 bp downstream
Rr474222	regulatory region 474222	8 bp distal
Tssr115561	transcription start site region 115561	734 bp downstream