rs45709588 SNP Detail

Summary

• ID
  rs45709588
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:3624378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTGTAATG AAACCCTAAA
  CCTGTACACT GAGGCAAATC ATAGCAGGGG ATTGGTGTTG GGGAGATGAC ATGGAGAAAC
  AAGACCACCC TGAAACTCCA TTTCCTAGGA CTGGGCTGTA GCAGAAATCC AGAAGACAGG
  AAAGAAAGTG CAGGAAAAAG ATAGGAAGCC TTGAGGCTGT GGTTCTCAAC CTTCCTAATG
  Y
  GGTGGCCCTT TAATACAGTT CCTCATGTTG TGACCCACAG GTTGGGAACC ACTTCCCTAA
  GATGCCCACT GAACACAGTT TTTAGTGACC ACCGCTCTTA AGGAAATTGC TTAAAGCAAG
  ATTGCCAAAC AAACCCTTAC TTGGGTTCAA GTTCTTTCTG ATCACGCCAA TAAAAATAAC
  TTCAAGGTAT GCGAGCATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146262550	ENSMUSSNP4050194	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45709588					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3624378 () rs orientation: forward

Symbol	Name	Function Class
Gm50615	predicted gene, 50615	Intron
Rr550923	regulatory region 550923	201 bp proximal