rs45712979 SNP Detail

Summary

• ID
  rs45712979
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44891444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGTGATTG ACTGATCGTT
  TAGATATGAG TCTCTGGTGC GTGTGCCCTG ACATGTGTGG GGGTCAGAAG ACAACTTGTG
  GGAGTTAGTT CTCTCTTGTC TTCATGTGGA GAACAGGATG GAATGTAGGT CATCAGAACT
  GGCAGCAAGT GCTTTTACCC ACTGAGCCAT CTTGTTGGCC TCAACTTGAT TAGCTTTTGA
  R
  ACAGGGTCTC AACTAGCCCA GGCTGGCCTA GAACACGTTG TGTGGTCAAG GATAACAAAG
  GACTTTATTC AAGTCCTCTC ATCTCTACTT CCCAAGGACT GTGATTTCTG TCACAGGCCA
  TCAAAACTCC TCTAATGAGA TACTGGGGGT GAAACCTAGG GCCCTGTGCA TTCAGGGCAA
  GCATTCAACC AAACGAGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss149131962	ENSMUSSNP4113352	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs45712979					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44891444 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19038	CpG island 19038	677 bp distal
Rr380753	regulatory region 380753	within coordinates
Slc6a16	solute carrier family 6, member 16	within coordinates
Tssr66503	transcription start site region 66503	914 bp downstream
Tssr66504	transcription start site region 66504	906 bp downstream