rs45713458 SNP Detail

Summary

• ID
  rs45713458
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21425440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGG GCCATGCTGG ATAAAAGCCT
  R
  CAGGGCAGAA CTGGCACCTA CAGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52314508	NES15371714	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	A	A	A	A		G	A	G	G		A
ss137298253	ENSMUSSNP2016063	ENSEMBL	ENSEMBL_Sanger	f	SNP							A
ss323931444	CHEV_12_21381300	CHEVERUD	SCREENING_POP	f	SNP										A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45713458					SNP	A	G	G	G	A	A	A	A	A	A	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52314508	NES15371714	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21425440 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	1807 bp upstream
Cpgi4477	CpG island 4477	1232 bp distal
Gm49586	predicted gene, 49586	1093 bp downstream
Tssr112932	transcription start site region 112932	1660 bp downstream
Tssr112933	transcription start site region 112933	1182 bp downstream
Tssr115856	transcription start site region 115856	1947 bp upstream
Tssr115857	transcription start site region 115857	1921 bp upstream
Tssr115858	transcription start site region 115858	1893 bp upstream
Tssr115859	transcription start site region 115859	1847 bp upstream
Tssr115860	transcription start site region 115860	1822 bp upstream