rs45714559 SNP Detail

Summary

• ID
  rs45714559
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21872431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTACTTG GGGGTGTTCA
  AATAATAGTA TCAACTGATC AGTCCCGTTC TTGGCTCAAA GCCAATCAGA TAGAAGACCC
  CAAAGTCAGG AACTGGCTGT GGGCCCTATA AAGGCAGAGA CAGACACCTG ACAGAGATCT
  TGATATCTGG GAATTTGTAC CAGGTTGTGA AAGGGGCCGA AGCTCTCTGA TGGGTTGCCC
  S
  AGAGGCATGA GCATCCATCA GAAATGCTCA TGGGGGTCGG GGGACAGAGC TCCAATGGTA
  TGGGCCGACG ATATGGCTCA GTGGACCCAA GTGATGGGAA TAGAAAGCTC ACAAAAGTTG
  TCCTTTGACC TCTACAAGTG CACAGTGGCA AGTGTGCACC TCTCCCACAC AAATAAACAT
  CATTTTTTAA ATATCTAAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61359793	NES16733481	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45714559					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61359793	NES16733481	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21872431 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21464	CpG island 21464	225 bp distal
Cpgi21465	CpG island 21465	327 bp proximal
Epor	erythropoietin receptor	within coordinates
Rr675079	regulatory region 675079	278 bp distal
Rr675080	regulatory region 675080	382 bp proximal
Rr675081	regulatory region 675081	416 bp proximal
Tssr2805	transcription start site region 2805	1174 bp downstream
Tssr88426	transcription start site region 88426	1206 bp downstream
Tssr88427	transcription start site region 88427	1251 bp downstream