rs45715553 SNP Detail

Summary

• ID
  rs45715553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:34099946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATATGTAC AAAGTTTTTA
  ATAAAGCTAA TGACATAAAA TTATGCTTTC ATGGTTAATA AGAGTGTAGT CTTCCATTTA
  AGAAAACTGC AAAATATGAA GTAGTCATGG GTAGGTTGTA AAGTTAAAGT TTTGTTTTGT
  TTTTAAAGAA GACTATGTCA CCATTTTTTT TTTTAAAAAC ATTACAGTGG TGTTAGTAAA
  Y
  GTTTCATTGT GCCTAAAGTC ATTTGCAACT TGAGTATCTT CTGTTTAAGG TTCTGGCTTT
  ATAGGTCTGA TACAAATCTT AACATGATTC TATCATAATA GAATCCTGTT ACTCATAATA
  ACGTACTTTT TAATGTAAAA AATGTGTAGC AAAATTGTCC AGTGGTATCG TTTAAACTGA
  TTTCCCTTAT TAGGGGAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147537779	ENSMUSSNP4629222	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45715553					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34099946 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mtdh	metadherin			Intron
				Noncoding-Transcript-Variant
Tssr131017	transcription start site region 131017			269 bp downstream
Tssr133963	transcription start site region 133963			267 bp upstream