rs45715561 SNP Detail

Summary

• ID
  rs45715561
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34353912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGACTCAGG ATCCCCGGAG CAAAGACCAG AAGAGAGGAA
  CGAAATACCG CAGAGGCAGG GCATAGGCTG CTGCGGCTGC GCAGTCCAAT CCCTCATTCC
  C
  GAGCAGCGGG ACGCCGGCCA GCCGCTCCCA TCGCGCGTGC GCACTGCCCG CTTCCCGCCT
  CCAACAAGAT GGCGAAGGCC CTGTGCTGAG GGGGCGGAG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146937888	ENSMUSSNP835922	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45715561					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34353912 () rs orientation: forward

Symbol	Name	Function Class
Apc	APC, WNT signaling pathway regulator	65 bp upstream
Cpgi9813	CpG island 9813	within coordinates
Rr370354	regulatory region 370354	within coordinates
Rr535610	regulatory region 535610	within coordinates
Rr535611	regulatory region 535611	58 bp proximal
Rr535612	regulatory region 535612	136 bp proximal
Rr535613	regulatory region 535613	489 bp proximal
Rr535614	regulatory region 535614	798 bp proximal
Rr535615	regulatory region 535615	1717 bp proximal
Tssr150444	transcription start site region 150444	31 bp upstream
Tssr150445	transcription start site region 150445	95 bp upstream
Tssr150446	transcription start site region 150446	119 bp upstream
Tssr150447	transcription start site region 150447	249 bp upstream
Tssr152786	transcription start site region 152786	774 bp downstream