rs45716918 SNP Detail

Summary

• ID
  rs45716918
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163443010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C GGTGTCTTTA GCAAAGCAAC AAAATACATT TGTGTTATTT
  GAAGTCACTA TGTAGTAATT TGTTATAAAT GGAACAGGAA ACTAACACTT AGATTTGGGC
  S
  GGGGGGGGGC GCGGACGGGG GACAGGACAC CTATTTAAAT GTGAGTTTCT GAGAAACAAA
  CATTTCTAAA GTATGTGTCC CAAATGTTAC ATAAGGAACC T                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148206380	ENSMUSSNP7222005	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs45716918					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163443010 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12638	CpG island 12638	908 bp proximal
Rr397464	regulatory region 397464	1449 bp upstream
Rr569431	regulatory region 569431	1383 bp distal
Rr569432	regulatory region 569432	1640 bp distal
Rr569433	regulatory region 569433	within coordinates
Rr569434	regulatory region 569434	734 bp proximal
Rr569435	regulatory region 569435	922 bp proximal
Rr569436	regulatory region 569436	1118 bp proximal
Rr569437	regulatory region 569437	1243 bp proximal
Tssr21475	transcription start site region 21475	1204 bp upstream
Tssr21476	transcription start site region 21476	1241 bp upstream
Ttpal	tocopherol (alpha) transfer protein-like	1224 bp upstream