rs45717158 SNP Detail

Summary

• ID
  rs45717158
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26728353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCAACACAA CTTTCTTTTG TTTTGTTTTG TTTGTTTCAG
  AGAGGATCTT GCTGTGTAGC TCTGGCTAGT CTTGAACTCA TAGAGATCCT CCTGTCCCTG
  M
  CTTACTAAGG ATTAAAGGCA TCTGCCCTCG TGCCTTTCAT CTCCACTGAA CAGAAGCTGA
  GCACACCAAG GACTCAGGGC CAAGAGCCTT GAATCCGCC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ
ss60554913	NES16570040	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	C		A	C	A
ss145404939	ENSMUSSNP2231400	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ
rs45717158					SNP	A	C	A	A	A	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60554913	NES16570040	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26728353 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8811	CpG island 8811	356 bp distal
Dusp1	dual specificity phosphatase 1	907 bp upstream
Gm56886	predicted gene, 56886	within coordinates
Rr339410	regulatory region 339410	within coordinates
Rr392454	regulatory region 392454	1512 bp upstream
Rr405112	regulatory region 405112	646 bp downstream
Rr405113	regulatory region 405113	274 bp downstream
Rr406958	regulatory region 406958	within coordinates
Tssr5044	transcription start site region 5044	415 bp downstream
Tssr5045	transcription start site region 5045	84 bp downstream
Tssr5046	transcription start site region 5046	137 bp downstream
Tssr5047	transcription start site region 5047	146 bp downstream
Tssr143231	transcription start site region 143231	1878 bp downstream
Tssr143232	transcription start site region 143232	699 bp downstream
Tssr143233	transcription start site region 143233	648 bp downstream
Tssr143234	transcription start site region 143234	605 bp downstream
Tssr143235	transcription start site region 143235	322 bp upstream
Tssr143236	transcription start site region 143236	347 bp upstream
Tssr146951	transcription start site region 146951	1720 bp upstream
Tssr146952	transcription start site region 146952	1172 bp upstream
Tssr146953	transcription start site region 146953	1132 bp upstream
Tssr146954	transcription start site region 146954	897 bp upstream
Tssr146955	transcription start site region 146955	497 bp upstream
Tssr146956	transcription start site region 146956	115 bp downstream
Tssr146957	transcription start site region 146957	180 bp downstream