rs45717677 SNP Detail

Summary

• ID
  rs45717677
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:106965027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCATTTCT GATAAGCTCT
  AAGGAGATGG ATGCCCCCCC CCACCCCTCT TTTCTGCTCT GCACCGGCTT TGTGAGGCAC
  AGGAGGATCA GGCACACTGT AATGGTGGAA CTTCTAATGT GACCCCTGGC TTGCAGAACC
  ACCGTATATA ACAGACAGAT ACAGCCTTGA CCAATGGTCC TAAATTCCTA GACTTCTGGC
  W
  GGGTCAGGTG GGCTGAGACG CTGACCATAT TGAGGAGATT TGAGCGCAGT GTACTGGGAA
  ACACCCTGAG TGCTACCCTG GAGTGCTCTT CAGGGAGCTG GCTGGGATCC CCATCTCCTT
  GGACTGGGAC ATTTAAATGC ACACGTTGCT TGCAGCTTGC CTTGGAGCTG AAATCGTATA
  GATCATTGTT CTCTCTTGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61697969	NES17635215	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45717677					SNP	A	A	A	A	A	A	T	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61697969	NES17635215	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:106965027 () rs orientation: forward

Symbol	Name	Function Class
Gm61206	predicted gene, 61206	992 bp upstream