rs45717740 SNP Detail

Summary

• ID
  rs45717740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157122536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGTGACAG GTATGAAATA GTTTACAAAC CATTTCTTGG
  TTTGTAAAAT GCAGAAAATA CCCACCTCAC TTGGATATTA GAAGGCTTAA AGACTGGTGC
  R
  GTGCATACAA AGAACTCAGT ATAATTTGGG CCTACCCATT CAATTGAGTG TTCAAGTACG
  AGCCAGAAAA GTTGCTACTG TGCTTAAGTG TAGAAAGAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148095671	ENSMUSSNP4836509	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320585275	CHEV_2_157106352	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45717740					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157122536 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12571	CpG island 12571	777 bp distal
Mroh8	maestro heat-like repeat family member 8	1067 bp upstream
Rpn2	ribophorin II	within coordinates
Rr397441	regulatory region 397441	1567 bp downstream
Rr568459	regulatory region 568459	1460 bp distal
Rr568460	regulatory region 568460	668 bp distal
Tssr21228	transcription start site region 21228	1591 bp downstream
Tssr21229	transcription start site region 21229	1552 bp downstream
Tssr21230	transcription start site region 21230	1486 bp downstream
Tssr21231	transcription start site region 21231	1299 bp downstream
Tssr27165	transcription start site region 27165	1098 bp upstream
Tssr27166	transcription start site region 27166	1061 bp upstream
Tssr27167	transcription start site region 27167	1038 bp upstream