rs45719218 SNP Detail

Summary

• ID
  rs45719218
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113393797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCATA GTGAGACCTG TGACAAGAGA
  R
  GAAGGAAACA GGAGAAGGAG AAAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138742415	ENSMUSSNP4541270	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45719218					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113393797 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	351 bp downstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	344 bp upstream
Ighj2	immunoglobulin heavy joining 2	662 bp upstream
Ighj3	immunoglobulin heavy joining 3	1045 bp upstream
Ighj4	immunoglobulin heavy joining 4	1610 bp upstream
Tssr115504	transcription start site region 115504	50 bp upstream
Tssr118005	transcription start site region 118005	1630 bp upstream
Tssr118006	transcription start site region 118006	1599 bp upstream
Tssr118007	transcription start site region 118007	1553 bp upstream
Tssr118008	transcription start site region 118008	1526 bp upstream
Tssr118009	transcription start site region 118009	1515 bp upstream
Tssr118010	transcription start site region 118010	1377 bp upstream
Tssr118011	transcription start site region 118011	1279 bp upstream
Tssr118012	transcription start site region 118012	1044 bp upstream
Tssr118013	transcription start site region 118013	1029 bp upstream
Tssr118014	transcription start site region 118014	925 bp upstream
Tssr118015	transcription start site region 118015	829 bp upstream
Tssr118016	transcription start site region 118016	675 bp upstream
Tssr118017	transcription start site region 118017	335 bp upstream
Tssr118018	transcription start site region 118018	199 bp downstream
Tssr118019	transcription start site region 118019	216 bp downstream
Tssr118020	transcription start site region 118020	272 bp downstream
Tssr118021	transcription start site region 118021	412 bp downstream
Tssr118022	transcription start site region 118022	444 bp downstream
Tssr118023	transcription start site region 118023	609 bp downstream