rs45720230 SNP Detail

Summary

• ID
  rs45720230
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:38605075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGATTAGG GAAACAGTGA
  GAAACGGGAC AAGAAAGATT CTGAATTATG TCTTCCACGA GGCAGAACAT GCAGAAAGGC
  CATGGTGTGG ACGAATGGCA GTCAGTGCCG GCCGGGATCC CAGCTTGGGC ATTGGGAATC
  AGGCTTCTTC GACTCAGAAT TCCTGCTGTG ACCTGTCAGC CATTCATTCC TAGATACATT
  Y
  CTTAGCGTTT AGTGCCTTTC TCTTTTAATT TAGAAACGAC AAGCAAGGCT TCCCGATACT
  GCATGGGTAT TAATAGTGTG TGTATTGGCA CGACGAGCAC ACAGCGAGGG GTCGAAGCAT
  GTCAGTTGCT GGAGTGTCAT TTTTGCTCCA TGCATTGGGG ACTATACTCA CAAAGTCGCG
  TTGTGTTGCT GCTGTGATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60446798	NES16430272	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs45720230					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60446798	NES16430272	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:38605075 () rs orientation: forward

Symbol	Name	Function Class
Tssr138414	transcription start site region 138414	470 bp downstream
Tssr141114	transcription start site region 141114	1188 bp upstream
Tssr141115	transcription start site region 141115	1100 bp upstream
Tssr141116	transcription start site region 141116	977 bp upstream
Tssr141117	transcription start site region 141117	847 bp upstream
Tssr141118	transcription start site region 141118	430 bp upstream
Upk1b	uroplakin 1B	within coordinates