rs45720449 SNP Detail

Summary

• ID
  rs45720449
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27387312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAA TGAAGTTTTT TTTTTTTTAT
  T
  TATAAAATTT GGCCCTTAGA ATAAC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137464424	ENSMUSSNP234149	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45720449					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27387312 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4506	CpG island 4506	1434 bp proximal
Rr464224	regulatory region 464224	1161 bp distal
Rr464225	regulatory region 464225	18 bp distal
Rr464226	regulatory region 464226	481 bp proximal
Sox11	SRY (sex determining region Y)-box 11	within coordinates
Tssr113042	transcription start site region 113042	1090 bp downstream
Tssr113043	transcription start site region 113043	940 bp downstream
Tssr115962	transcription start site region 115962	1728 bp upstream
Tssr115963	transcription start site region 115963	1249 bp upstream
Tssr115964	transcription start site region 115964	874 bp upstream
Tssr115965	transcription start site region 115965	825 bp upstream
Tssr115966	transcription start site region 115966	746 bp upstream
Tssr115967	transcription start site region 115967	476 bp upstream
Tssr115968	transcription start site region 115968	462 bp upstream
Tssr115969	transcription start site region 115969	381 bp upstream
Tssr115970	transcription start site region 115970	346 bp upstream
Tssr115971	transcription start site region 115971	290 bp upstream
Tssr115972	transcription start site region 115972	177 bp upstream
Tssr115973	transcription start site region 115973	174 bp downstream
Tssr115974	transcription start site region 115974	222 bp downstream
Tssr115975	transcription start site region 115975	262 bp downstream
Tssr115976	transcription start site region 115976	284 bp downstream
Tssr115977	transcription start site region 115977	298 bp downstream
Tssr115978	transcription start site region 115978	930 bp downstream
Tssr115979	transcription start site region 115979	1022 bp downstream
Tssr115980	transcription start site region 115980	1189 bp downstream
Tssr115981	transcription start site region 115981	1870 bp downstream