rs45723003 SNP Detail

Summary

• ID
  rs45723003
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:74771164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTA TTGGCGCCAC GCGCAAGGGG
  R
  TCCGCACTTC AATAGGGTGT GCACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323007150	CHEV_9_74711689	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs45723003					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:74771164 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22034	CpG island 22034	within coordinates
Gm20649	predicted gene 20649	within coordinates
Gm33562	predicted gene, 33562	746 bp upstream
Gm38678	predicted gene, 38678	1916 bp upstream
Gm68752	predicted gene, 68752	416 bp upstream
Onecut1	one cut domain, family member 1	within coordinates
Rr206725	regulatory region 206725	within coordinates
Tssr2940	transcription start site region 2940	1945 bp downstream
Tssr86109	transcription start site region 86109	1998 bp downstream
Tssr86110	transcription start site region 86110	1967 bp downstream
Tssr86111	transcription start site region 86111	1753 bp upstream
Tssr90520	transcription start site region 90520	446 bp upstream