rs45723565 SNP Detail

Summary

• ID
  rs45723565
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28018521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AATCCCAGCA ACCACATGGT GGCTCACAAC CACCCATAAT
  GAGATCTGAC ACCTCTTCTG GTGTGTCTGG AGACAGCAAC AGTGTATGTA TATATAATAA
  Y
  AAATAAATCT TTAAAAAAAA ATGCTTTTCT TGGGCAGAGG GAACAGCTCA GGGGTAGTGT
  TGAGTATACA CACAGCCATA GTCTTAACCC CAGTAGTGAA A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145419477	ENSMUSSNP2693834	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45723565					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28018521 () rs orientation: forward

Symbol	Name	Function Class
Ilrun	inflammation and lipid regulator with UBA-like and NBR1-like domains	within coordinates
Rr330150	regulatory region 330150	1680 bp proximal
Rr392473	regulatory region 392473	within coordinates
Tssr147066	transcription start site region 147066	1973 bp upstream