rs45724834 SNP Detail

Summary

• ID
  rs45724834
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:98178123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGGGGGTC TAGGGGGAGT
  ATGATAAAGA GGCACAAAAG TTCCTGGGAG GAAACGAGCT GCAGGTGGCC ACACTACCGT
  TTCCCAAAAG ATTCCAGGAC AAAAAAAGCA CTGCACGCCT CTCCTTTGGA GAACCAAGTA
  GCCCTGGAGT CTCGCAGCCC CTATTCCTGT ACAGCTAATG AGCTTGCCTT TGAAAGGAGT
  M
  AGCCACATGC ACACTAGGGA GAGTTCCCTC GTCGCCTCCC CCAGAATCCA AACACATCTC
  AACTTCAGTC CTAGCTGATT CAGAGCTGCC CTCCCCCCAG GAGACCCTGA CCCCACAGTC
  CTCCTTCACT CACTTGTCCA GTACGAAGTA CAAATCGAAG GCTTTTTTGC AAGAGGGCTG
  CTCCTGGGCT TGCAGCAACG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61199549	NES16709294	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45724834					SNP	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61199549	NES16709294	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98178123 () rs orientation: forward

Symbol	Name	Function Class
Antxr2	anthrax toxin receptor 2	Intron
Cpgi16083	CpG island 16083	112 bp proximal
Gm42759	predicted gene 42759	386 bp upstream
Rr615102	regulatory region 615102	1941 bp distal
Rr615103	regulatory region 615103	688 bp proximal
Tssr1554	transcription start site region 1554	688 bp downstream
Tssr47433	transcription start site region 47433	431 bp upstream
Tssr47434	transcription start site region 47434	461 bp upstream
Tssr47435	transcription start site region 47435	831 bp upstream
Tssr47436	transcription start site region 47436	1000 bp upstream
Tssr47437	transcription start site region 47437	1035 bp upstream
Tssr51988	transcription start site region 51988	306 bp downstream
Tssr51989	transcription start site region 51989	353 bp downstream
Tssr51990	transcription start site region 51990	366 bp downstream
Tssr51991	transcription start site region 51991	463 bp downstream
Tssr51992	transcription start site region 51992	533 bp downstream
Tssr51993	transcription start site region 51993	706 bp downstream
Tssr51994	transcription start site region 51994	730 bp downstream
Tssr51995	transcription start site region 51995	873 bp downstream
Tssr51996	transcription start site region 51996	1033 bp downstream
Tssr51997	transcription start site region 51997	1071 bp downstream
Tssr51998	transcription start site region 51998	1111 bp downstream
Tssr51999	transcription start site region 51999	1146 bp downstream
Tssr52000	transcription start site region 52000	1167 bp downstream
Tssr52001	transcription start site region 52001	1187 bp downstream
Tssr52002	transcription start site region 52002	1207 bp downstream
Tssr52003	transcription start site region 52003	1249 bp downstream