rs45725260 SNP Detail

Summary

• ID
  rs45725260
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77874772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTATACT GCTCTCAGAG
  TTCAGTTCCA GCAGTGTCCA TAGAGGCCAG GAGAGGGCAG CATGGAGGGC AACTAGGATA
  ATTCCTCATG AAAAATTCCC AAGTGCCTTG TTCTGTTGAG CAGGTCCAAT GAAACCGCCT
  ATGGGTGTTA ACACATGCAG GGATGACCAT AGATGGCTGG GAAGGACATA CCCAGTAGAT
  Y
  CGCAGTCTGG GAGCCTCTAT TTGGACTCAG AGTGGCTGCT GGAACAGGGT ATGTGCTATG
  TCCTGGCACT TGCTGGTGAG ATGTCTCAAA ATAGGGCTTG AGATTAAGTC ATAAAAATAA
  TGTGGCTTCC CTGTGGATTT CCGTCTCTCT CCTCTGTTCC TCTTGGCTCA CTGGCTCTGG
  GGTAAGCAGG TTTCAGCGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63193949	NES17463822	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45725260					SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63193949	NES17463822	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77874772 () rs orientation: forward

Symbol	Name	Function Class
D18Mit47	DNA segment, Chr 18, Massachusetts Institute of Technology 47	897 bp distal
Rr347430	regulatory region 347430	1572 bp distal
Rr347431	regulatory region 347431	within coordinates
Rr355616	regulatory region 355616	within coordinates
Rr356493	regulatory region 356493	1466 bp distal
Rr393943	regulatory region 393943	503 bp upstream