rs45725739 SNP Detail

Summary

• ID
  rs45725739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:59243174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAGCTGCAC AGTGTGCTAA TACCTTCTCC GTCTCTCTGC
  TGCCTCTGGT CTGTCATGGC TCCTTTTTAT CTTCAGAAGC TTCACACTGC AGCAAACCTC
  Y
  ACTTTTTAAA ATAATTTGAG ACAGTGCCTC ATAGGACCCA GGTGAGCTCC AAACTTTCTC
  TGTAGCCAAG GATGACCCTG GACTTCTGAT CCTCCTGCCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52330484	NES15283241	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45725739					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52330484	NES15283241	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:59243174 () rs orientation: forward

Symbol	Name	Function Class
Pla2g12b	phospholipase A2, group XIIB	within coordinates
Rr215348	regulatory region 215348	374 bp distal
Rr219809	regulatory region 219809	627 bp proximal
Rr219810	regulatory region 219810	1027 bp proximal