rs45726201 SNP Detail

Summary

• ID
  rs45726201
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4762151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCGTTCT CAAAAGACTT
  CAGGTATTGG GCGTCTGATG GTGCATGTCA TTGAAGCTAC AGAATTAAAA GCCTGCAAAC
  CAAACGGTAA GTGCTGCTTT CATTCAACAG ATGTGGTGGC ACCCTGTTCC TTCCCTCTTT
  AGTCTTTAAA AGGCAGTGTC TCTGGTGTGC TAGAACCCTG AGAAGCTATG GATTGGGCCA
  W
  TATCATTCAC AGTTTCCCAA TAAGAACCAG CACCTACCAT TTTGACTGCT ACTGCACGAG
  AATGCACAGG TACACAACAC AGGTCCCTGG CCAGGCCTGT GGGGAACAGT CCTGCTGTTA
  GGACATACAC TTGTTCCCCA GGATTGTGAC ATCACTGGGA ACATGAGGCC ATACAGCTGC
  TAGACTCTAA GGTAACCGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss61339093	NES16947238	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs45726201					SNP	A	A	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61339093	NES16947238	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4762151 () rs orientation: forward

Symbol	Name	Function Class
Fam228a	family with sequence similarity 228, member A	1519 bp downstream
Gm53750	predicted gene, 53750	within coordinates
Itsn2	intersectin 2	within coordinates
Rr260649	regulatory region 260649	650 bp proximal
Tssr112576	transcription start site region 112576	185 bp upstream
Tssr112577	transcription start site region 112577	204 bp upstream
Tssr115645	transcription start site region 115645	64 bp downstream