rs45726420 SNP Detail

Summary

• ID
  rs45726420
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156957643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACAGCCATG TGCCAGCATA GCTGGGTTAT AAAACAGCTG
  GGTTTTAAAA CAGCTGCACA GCTACTCTCA AGACAAGACA TTCAAAGCAT GTTTGAAACT
  W
  AATTTTTGTT TTAGAAATGA GATAATTGTT CCTCAATCTA GCTCCTGTGT GTTTGTGTGT
  GTGTGCACAT ACAAGATGCA CCAGAGGTCA ATTGAGTGT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148092231	ENSMUSSNP2883244	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45726420					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156957643 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	763 bp distal
Rr568436	regulatory region 568436	1231 bp proximal
Rr568437	regulatory region 568437	1404 bp proximal
Rr568438	regulatory region 568438	1805 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27143	transcription start site region 27143	1397 bp upstream