rs45727561 SNP Detail

Summary

• ID
  rs45727561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:96802507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTACTTA CTTTAAGCCT
  GTCAGTTCTT TGTCGAGGAA ATGAATGACG ACTGTACTGA AGACAAAGCT TGAGAAAATT
  GTGAAGAGGC CAGCAATACC TAAACGGCAA ACGCCACAGT TAAAGTCTGC GCTCCTTACT
  ACACACGGGA TGCATGCAGT CTCTCTCAGT GCTCTAGAAG AGCACTGCCA CGTTCCTCTG
  Y
  ATCACTGAGG CCTCTCATCT GAGAGTACTA ACTGCTGAAT GAACCCAACA CTCTTTCAGT
  AGTGCACTGA AATCCAAAGT CTGCCAGCAT GCACAGCCGG CGACCAGCCT TACCCAGAAT
  GTACTTGGAC CCAAGCTGCC GTAGGTTCTG GAACTGGAAG TAAATGTACA GGATGGCGAT
  GCACCGCGTT ATCGTCAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ
ss61944160	NES17104346	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ
rs45727561					SNP	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61944160	NES17104346	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:96802507 () rs orientation: forward

Symbol	Name	Function Class
Hmgcr	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	within coordinates
Rr281794	regulatory region 281794	693 bp proximal
Rr281795	regulatory region 281795	1093 bp proximal
Rr285480	regulatory region 285480	930 bp distal
Rr285481	regulatory region 285481	307 bp distal
Tssr123569	transcription start site region 123569	710 bp downstream