rs45727891 SNP Detail

Summary

• ID
  rs45727891
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:21155287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTTAACC ACTGCAACAT
  AGAGATTTAA AATACTAACC ATCTAGAACT CCTAAGCAGA AGGAAACTAA ATTTCATCCT
  CAAAGCATTC CTAAGGCAAT GCTCCAACTC CCTAGGAGAG CGTTACACTG GGAACAAGGG
  TACACCGAAC CATTAGCTTG GCTTAGATGT TAGCATTCTT TTACATTGTG AATGATGAAC
  Y
  TTTCTATTCA GATAATTTTT CAAGATCTAA GGTACCATTA GATCAGCAAG GTTACTGGCA
  TTTCACCAGC ATTCCAAAAC AGAACGGAAT ACTTCACAAC AATGTGTGAC AATGACAACG
  TATATTTATA TAACCTCGTG ATCACCTAAA GATCTACTTT CCAACCCATA TCCACTTTGT
  ATTAGTCAGA TCTCTACATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss148002690	ENSMUSSNP2076848	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs45727891					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:21155287 () rs orientation: forward

Symbol	Name	Function Class
A630072M18Rik	RIKEN cDNA A630072M18 gene	700 bp upstream
Cpgi15559	CpG island 15559	516 bp proximal
Rr1248	regulatory region 1248	within coordinates
Rr377666	regulatory region 377666	488 bp upstream
Rr607829	regulatory region 607829	1348 bp distal
Rr607830	regulatory region 607830	210 bp proximal
Rr607831	regulatory region 607831	1523 bp proximal
Rsbn1l	round spermatid basic protein 1-like	within coordinates
Tssr45282	transcription start site region 45282	482 bp upstream
Tssr45283	transcription start site region 45283	641 bp upstream
Tssr45284	transcription start site region 45284	667 bp upstream
Tssr45285	transcription start site region 45285	694 bp upstream
Tssr45286	transcription start site region 45286	745 bp upstream
Tssr45287	transcription start site region 45287	882 bp upstream
Tssr45288	transcription start site region 45288	1671 bp upstream
Tssr50223	transcription start site region 50223	1480 bp downstream