rs45727996 SNP Detail

Summary

• ID
  rs45727996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43059139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATGTCATT TAGTTGGTAG AGTGCTTGCC CAGCATGCAC
  GAGGCCCTGG GTTCCATCCT CAGCAGCACA TATACGGGAG GTGGTGGTTG CACATCTATA
  Y
  TCCAACCCTT AGGAGGGAGA GAAGCAAGAC GATCAGGAGT TCGAGGTTAT CCTTGGCTAT
  GTAACATATA TACATGATAG AATCCATGAT CTTGTATAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss149071768	ENSMUSSNP4586902	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs45727996					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43059139 () rs orientation: forward

Symbol	Name	Function Class
Rr645953	regulatory region 645953	1501 bp distal
Rr645954	regulatory region 645954	1141 bp distal
Siglecg	sialic acid binding Ig-like lectin G	within coordinates
Tssr65984	transcription start site region 65984	1504 bp downstream
Tssr65985	transcription start site region 65985	1495 bp downstream
Tssr65986	transcription start site region 65986	1459 bp downstream
Tssr65987	transcription start site region 65987	1442 bp downstream
Tssr65988	transcription start site region 65988	1430 bp downstream
Tssr65989	transcription start site region 65989	1197 bp downstream
Tssr65990	transcription start site region 65990	1176 bp downstream
Tssr65991	transcription start site region 65991	453 bp downstream
Tssr65992	transcription start site region 65992	442 bp downstream
Tssr65993	transcription start site region 65993	414 bp downstream
Tssr65994	transcription start site region 65994	295 bp downstream