rs45728809 SNP Detail

Summary

• ID
  rs45728809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19433641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGGTTTG AAGCCATACA
  TTAAGCCAAG CCCTGGGAAA CCAAGCGTTG ATGCTCCTGA TCTGTTTCTG GCGATTGCCA
  GATGTGTCAC CTTGGGAGGG AAGAGCTACC CCTACAGAGC ACATTTTAAA AAGTTGTTTT
  GAGATAAGAT TCTCAGGCTG CCCTCTAACC CACAAAGGTC CTTCTGCCTC TGCTGTAGCA
  Y
  GCTGGGACTG CAGGTGTGCA CCCCTGCATG TGCATTTTCC ACTCTCAAGC CACTTCTCTT
  TTCTTTTTCC TCATAAAAGC AGAAGAGCAG GAGCTGGAGA GATGACTCAG AGGTTAGGAG
  CACTGACTGC ATTTCACAGG ACCTAGGTTC AAAATCGCAG CACCCACACA GCAGCTCACA
  ACTGTAACAC CAAGATCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148481758	ENSMUSSNP1105395	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs45728809					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19433641 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	mRNA-UTR
Cpgi18508	CpG island 18508	915 bp distal
D7Mit57	DNA segment, Chr 7, Massachusetts Institute of Technology 57	1797 bp distal
Gm71725	predicted gene, 71725	within coordinates
Rr643242	regulatory region 643242	819 bp distal
Rr643243	regulatory region 643243	1420 bp distal
Rr643244	regulatory region 643244	38 bp distal
Rr643245	regulatory region 643245	614 bp proximal
Rr643246	regulatory region 643246	1540 bp proximal
Tomm40	translocase of outer mitochondrial membrane 40	1597 bp downstream
Tssr64897	transcription start site region 64897	1593 bp upstream
Tssr71005	transcription start site region 71005	1718 bp upstream
Tssr71006	transcription start site region 71006	1685 bp upstream
Tssr71007	transcription start site region 71007	1623 bp upstream
Tssr71008	transcription start site region 71008	1517 bp upstream
Tssr71009	transcription start site region 71009	1455 bp upstream
Tssr71010	transcription start site region 71010	1335 bp upstream
Tssr71011	transcription start site region 71011	1311 bp upstream
Tssr71012	transcription start site region 71012	1281 bp upstream
Tssr71013	transcription start site region 71013	653 bp upstream
Tssr71014	transcription start site region 71014	109 bp upstream
Tssr71015	transcription start site region 71015	3 bp downstream
Tssr71016	transcription start site region 71016	239 bp downstream
Tssr71017	transcription start site region 71017	688 bp downstream
Tssr71018	transcription start site region 71018	729 bp downstream