rs45728970 SNP Detail

Summary

• ID
  rs45728970
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:88970683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGACAGCG GACAGGGTTG
  TGAGGTTGTG ATAGAGACCT GACAGAGCTA AGTGTGCTGG GCCATCATCT AGTAGGTGCT
  AGAATAGCCT GGATAACCAC CGGGCGGTAA GCTGGATGCA GTGCTCTGGT GCAGGGACAG
  GGGTGGGGGT GGGGGTGGGG GCTAAGGGGT CTGTCAACCT GGACCCGATA TTGAGAGTTC
  R
  TACTGCCAAT GAGAAAGAGA GAGGTCTACT AAGTCGCTAG CTTTCTCCCC AACCCTCCTC
  TTGGGCGCGT GACTTCAATT ACAACAGCTC AAACAACTCT CTTCTCCTCC AACCCCAGGG
  GGCTTGAGCA TTATTTTGTA CTCCCTCTGG GTAAGACCTT AACTCTTGGT AATAGATGGC
  TGTGATGTGC AAACCAACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61911664	NES17093085	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45728970					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61911664	NES17093085	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:88970683 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi5919	CpG island 5919			282 bp distal
Cpgi5920	CpG island 5920			1074 bp proximal
Edil3	EGF-like repeats and discoidin I-like domains 3			Intron
				Noncoding-Transcript-Variant
Gm38504	predicted gene, 38504			1620 bp upstream
Rr483401	regulatory region 483401			912 bp distal
Rr483402	regulatory region 483402			1284 bp distal
Tssr120562	transcription start site region 120562			1044 bp downstream
Tssr120563	transcription start site region 120563			984 bp downstream
Tssr120564	transcription start site region 120564			973 bp downstream
Tssr120565	transcription start site region 120565			961 bp downstream
Tssr120566	transcription start site region 120566			941 bp downstream
Tssr120567	transcription start site region 120567			888 bp downstream
Tssr120568	transcription start site region 120568			880 bp downstream
Tssr120569	transcription start site region 120569			845 bp downstream
Tssr120570	transcription start site region 120570			825 bp downstream
Tssr120571	transcription start site region 120571			803 bp downstream
Tssr120572	transcription start site region 120572			650 bp downstream
Tssr120573	transcription start site region 120573			622 bp downstream
Tssr120574	transcription start site region 120574			588 bp downstream
Tssr120575	transcription start site region 120575			1027 bp upstream
Tssr120576	transcription start site region 120576			1650 bp upstream
Tssr123374	transcription start site region 123374			769 bp upstream