rs45729863 SNP Detail

Summary

• ID
  rs45729863
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:65143542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGATAAA TAAATAATAA
  AGGTTTTACA AACAAATCCC GAAGGTACTT CTGCGATGAA ATTACTTAAG GTAGGTAGTC
  TGCTTCATAA GGGGTCTGAG CAACATTAGA GTTTGTAAAT TTCCAGAATT TGTGCATTTT
  CTGCCCCCTG TGGGGCGGCA CTCGTCAATG TCCCTGATCT ATGAGTCCCT AGGATTCTTT
  Y
  CCATGAGTTG GCACAGACAC TTCCTGTCCC ATAACCTTTG TGCCAGATTT CCCATTCACC
  GGAGCAACCT GTGTATAAGT CATAGAAGCT GGCTCATCTT GAAGGTGTAG GATTTCAAAA
  TGGCCAAAGG AATAACATTG AATGTACCCA TTTCTACCAC GGAAGAGACA CAGATATGCC
  TTCTTATCTG CTCACCCGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60622505	NES16302435	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45729863					SNP	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60622505	NES16302435	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:65143542 () rs orientation: forward

Symbol	Name	Function Class
Cpe	carboxypeptidase E	within coordinates
Cpgi20388	CpG island 20388	1978 bp proximal
Rr664168	regulatory region 664168	1951 bp distal
Rr664169	regulatory region 664169	1404 bp distal
Tssr81419	transcription start site region 81419	1020 bp upstream
Tssr81420	transcription start site region 81420	1941 bp downstream