rs45730434 SNP Detail

Summary

• ID
  rs45730434
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191571640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTC GGAAACAGAG TGCTGTGAAG
  K
  CCTTTATCTG CTGTTCCTGG GGGCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60360496	NES15857424	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	G	T	T	T		G	T	T	T		T
ss146511014	ENSMUSSNP2199707	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss320196173	CHEV_1_193663407	CHEVERUD	SCREENING_POP	f	SNP												T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45730434					SNP	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60360496	NES15857424	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191571640 () rs orientation: forward

Symbol	Name	Function Class
Rr426234	regulatory region 426234	1498 bp distal
Rr426235	regulatory region 426235	within coordinates
Rr426236	regulatory region 426236	495 bp proximal
Rr426237	regulatory region 426237	982 bp proximal