rs45730892 SNP Detail

Summary

• ID
  rs45730892
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:86806834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATACTTGAC AAGTGGTCTT
  ATCAATGGGC TCTACTTGAA GTCCACCCTC TTCTTTAACT TATCTGAAAA TGTAAATACA
  TAGTGTACGA GGGAAATGTA CATATACATG TATGTACACT ATATACATAC AAACATGTAT
  AGTATACTAT AAAACCAGGG ATACGTTTTT CTCAGAGCCC ACCATAAATA TATTCCTAAG
  Y
  CCACCTCTCT ACCTACACCC ACTTTGAAAG CGCACATACC TCGTCTCTCC ACTGCAACAT
  CCACTCCCAC CACCCTTGAC TGTGACATCC TACACCACCT TGCATTGTGA CTTCCCATAG
  CTTGTCACCC CCCAACCCCG ACTGTGGCAG TAAGCTTCTC CTCCCTCTAC TTTGCCATCG
  AATCCACACT TTTCCACATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52575648	NES15650185	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45730892					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52575648	NES15650185	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:86806834 () rs orientation: forward

Symbol	Name	Function Class
Gm49466	predicted gene, 49466	1004 bp downstream
Rr315010	regulatory region 315010	834 bp distal