rs45731248 SNP Detail

Summary

• ID
  rs45731248
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90920154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAACCTGG CTGTATGACA
  CATACAACCC AGCTATATAC ATGTATTTTT ACACTTTATT TGCAGTAGTG GGGGCACCGC
  CATCCCGCTC AACATTTGTA GCTTTGAAAC CAAGCATATA TTAGTGATAT ATTAGTGTAA
  ATGTGGAATA AGAGAGCTAA TAGAATTCAG AAAAGACTCT GGATATCCTC CAGGGTAGAG
  W
  AGTTTTGATG CAGGTTTATT TCCAGCTTAG TTTATTGGTG ACACCCTGAG TCCTTGAGTT
  TTTTGTTTTT TTTTTTTTTT GGGGGGGGGG GTCTATGGTT GAGTGGTTGG TTTGGTTTTT
  TGAGAAAGGC TCTTAGGTAG CCTAGGTTAG ATTAGAACTC ACTATATAGC CGAAGGTGAC
  ATTGAACCCC TGATCTTCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147290304	ENSMUSSNP1018635	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
ss323387290	CHEV_10_90547037	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45731248					SNP	A	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90920154 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	1522 bp upstream
Cpgi2099	CpG island 2099	756 bp distal
Ikbip	IKBKB interacting protein	within coordinates
Rr402144	regulatory region 402144	1138 bp downstream
Rr436976	regulatory region 436976	1874 bp distal
Rr436977	regulatory region 436977	1225 bp distal
Tssr95223	transcription start site region 95223	1264 bp downstream
Tssr95224	transcription start site region 95224	1217 bp downstream
Tssr95225	transcription start site region 95225	1189 bp downstream
Tssr98900	transcription start site region 98900	1715 bp upstream
Tssr98901	transcription start site region 98901	1631 bp upstream
Tssr98902	transcription start site region 98902	1592 bp upstream
Tssr98903	transcription start site region 98903	1519 bp upstream
Tssr98904	transcription start site region 98904	1485 bp upstream