rs45733945 SNP Detail

Summary

• ID
  rs45733945
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57015275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGGCAGAG TCAGCCGCTG CCTATACAAA GGCTACAGCG
  TGGACGTGTT TGCTGGAGAA GGTGGAGGTC ATCACGGGGG AGGAGGCAGA GAGCAATGTG
  S
  TGCAGGTGAG ACCAAAAACA GGGGTGTTAT GGCAGAGGGA CATCTTGTGC TACCTACTAC
  GTAGCACACA ACAGAATGAA GCTAGGTGTG TTGGTGCACA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62805932	NES17363132	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	C	C	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45733945					SNP	G	G	G	G	G	C	G	C	C	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62805932	NES17363132	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57015275 () rs orientation: forward

Symbol	Name	Function Class
Ranbp3	RAN binding protein 3	within coordinates
Rr392775	regulatory region 392775	within coordinates
Rr529157	regulatory region 529157	1398 bp distal
Tssr145328	transcription start site region 145328	583 bp upstream
Tssr145329	transcription start site region 145329	1631 bp upstream
Tssr145330	transcription start site region 145330	1661 bp upstream
Tssr145331	transcription start site region 145331	1706 bp upstream
Tssr145332	transcription start site region 145332	1729 bp upstream
Tssr145333	transcription start site region 145333	1753 bp upstream
Tssr145334	transcription start site region 145334	1789 bp upstream
Tssr148830	transcription start site region 148830	1565 bp downstream