rs45738339 SNP Detail

Summary

• ID
  rs45738339
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90877841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCA TGCTCCTGCC TTGATGATAA
  Y
  GGATTGACCC TCTGAACCTG TAAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148550128	ENSMUSSNP7054932	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss325276983	CHEV_16_91081198	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs45738339					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90877841 () rs orientation: forward

Symbol	Name	Function Class
Gm60345	predicted gene, 60345	within coordinates
Rr319589	regulatory region 319589	360 bp proximal
Rr322310	regulatory region 322310	759 bp proximal
Rr404954	regulatory region 404954	474 bp upstream
Tssr139335	transcription start site region 139335	1985 bp upstream