rs45738543 SNP Detail

Summary

• ID
  rs45738543
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:7280708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGAGGTA ACCCAATCAC
  AAAAGAACTC ACACAATATG TACTCACTGA TAAGTGGATA TTAGCCCAAA ACCTAGGATT
  CCCAAGATAT AAGGTAGAAG AAGGAAGGAG AAGGGAGGGA GGCAGGGGGA GAACCAGGAT
  AGGGGGACAG ACTGACGCAG AGACCCGAGC TGCGCGGGCC ATGGCAGAGG CCAGGCAGGC
  M
  GGGATGGAAG CAAACAGGGA AGCTTGGAGA GAGACAGACA GACAGACCCA GGGGCGACGA
  GGCACACAGG GAAGCCGGGA CGGGGCCTCG CGGTCGGAAG CGGACTCGGG CTTGGTCCCC
  GGGGAGAAGG AACGAGGGAG AAGGAGGGAG AAGGAAGGAG AAGGAAGGAG AAGGAAGGAG
  AAGGGAGAAC CGGGGGCTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60965536	NES16157324	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45738543					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60965536	NES16157324	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:7280708 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18306	CpG island 18306	19 bp proximal
Gm45844	predicted gene 45844	within coordinates
Tssr64464	transcription start site region 64464	280 bp upstream
Tssr70610	transcription start site region 70610	320 bp downstream
Tssr70611	transcription start site region 70611	361 bp downstream