rs45739406 SNP Detail

Summary

• ID
  rs45739406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18996397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGCCATA CAGGTTTGAA
  ATCTGCAGAA ACCACCACTT TTTCCAGGCC TGCACCACCA ATGGCATTTC TCCACGCACA
  CAGACTGGGG AAGCTCTCCC ACTAACACTA ACGAGGCCTT GTGAAGTCAA CATCTCAGCC
  ACTGGGCTGT TTTCCCTACA GAAAGCAGAG CAGTCACCTA GGACACCGCG AGGTGGGTGG
  R
  GACATGGCTC AGTGGTAGAG CACCTGAGTG GCTTGTCCAA AGCCACCCCC CCATTCAACC
  ACCAGCACCT CTTAAAAAAA AAAAAAAAAA AAAGGCAGGA TTTTGGCATC ATTAGGGAAT
  TTAAAATAAA AGAAGATTTG TTCCCTGCAC TAGAGTTTCC ACTTGACCCA GATCACCACA
  TGGGCTGAAT GTTTCCAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148471652	ENSMUSSNP7127025	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45739406					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18996397 () rs orientation: forward

Symbol	Name	Function Class
Tssr70879	transcription start site region 70879	1770 bp upstream
Tssr70880	transcription start site region 70880	1529 bp upstream
Tssr70881	transcription start site region 70881	1465 bp upstream
Tssr70882	transcription start site region 70882	413 bp upstream
Tssr70883	transcription start site region 70883	1997 bp downstream
Vasp	vasodilator-stimulated phosphoprotein	within coordinates