rs45740653 SNP Detail

Summary

• ID
  rs45740653
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:36068996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGAGAAATG TTGATGAACC CAGTTCTCCC AGTGCCCTCA
  GCTCCAGCCC AGCTTACGGC CTCTTGCCCC ATCTGGTGTG ACTGAGGAAG AGCAGGCCCT
  R
  AGCCAGCAGA AAGCAGCCTT GGGGCAGCTT CAATTTCAGC AAAACTGGAC CACGTGTCAC
  CCTGGGACCC GAAACCTGAT GCCCAACCCT CAGAGCCAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148866497	ENSMUSSNP429428	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss324315039	CHEV_13_35976882	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45740653					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36068996 () rs orientation: forward

Symbol	Name	Function Class
Rr271493	regulatory region 271493	1396 bp distal
Rr271494	regulatory region 271494	within coordinates
Rr271495	regulatory region 271495	1205 bp proximal
Rr283230	regulatory region 283230	within coordinates