rs45740697 SNP Detail

Summary

• ID
  rs45740697
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34922689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACTCCCT AAAAGTCCTA
  TGGGCCCGTG CCACAAGCCC AGAACACAAA GCAGGAGCCC AGGTGGATGA GGACGGAAGG
  GCGCTAGAGC ACATCCTGGA GCATGCTGGA TGGAGCCCTG AGGAGGGACA GATGGCAGAC
  ATAGACATGC TCTCCCTGGG GAGAAAGCAG GAAGCCGCAA AGCAGCTGTG GCAAGGCTTC
  R
  GAGGTTTCAC AGCAGCTCTG ATGCGGGGGA CCAGTTTCTC AGGGCAGGCC TGCGCAGCAG
  GGCGTCAGTC TTCAGCCACG CCCTTAGGAT GGTCAATCAT TGGCAGGAGC AGTGCAATAG
  GAACGAGCGT GGGCGACCCC GTGTCACTGT TTCAGTTTGT CCTGTTCAGT TGGTTGAGTG
  AGCGACAGAG AGCAAACAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149109250	ENSMUSSNP2082807	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45740697					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34922689 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20247	CpG island 20247	within coordinates
Gm39159	predicted gene, 39159	within coordinates
Gm45349	predicted gene 45349	within coordinates
Gm46038	predicted gene, 46038	1383 bp upstream
Rr400818	regulatory region 400818	within coordinates