rs45740801 SNP Detail

Summary

• ID
  rs45740801
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:13851274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGAAACT ACCACTTATA
  TAGTAATTCA ATGATTTACC TGTGACCTCT GAACTAGCAG AACCTTTATT TGAATTAGTC
  ATGTCTTCTT GCAAAGCCTG AGCTCTTTTC ACTTTGTCTT GTTTGTACCC TGTTTCTGGC
  TTAAGGAAAT TAAATTGCAC TCTAATTTAC CTAATTTCTG AACCATTAAT CCTAATGACT
  K
  CAAGCTGTAC CATCAATACT TTATTAATGA AACAGGAAAT GACATGTCTT TGAAAGCTTA
  ATAAAATGTA GTTAAAAGAA AAATATTTTG GGCACATACC AATTTTAAGC ATTTTTTGGC
  TAGGAAAATT ATCATTTATA ATTCTTGAGT AGTGCAAGGC AAGGTGGGCT GTGGCATGGT
  TGTGACTTTA GAAGAGAAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61750106	NES17677591	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	T	T	T	T	G	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45740801					SNP	T	T	G	T	T	T	T	T	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61750106	NES17677591	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:13851274 () rs orientation: forward

Symbol	Name	Function Class
Lyst	lysosomal trafficking regulator	within coordinates
Rr270836	regulatory region 270836	1274 bp distal
Rr275153	regulatory region 275153	1674 bp distal
Rr282634	regulatory region 282634	1127 bp proximal