rs45741644 SNP Detail

Summary

• ID
  rs45741644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:141064677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAATTGTC TCTTTGGCTT
  CTGCTGCATC ATCAGTGTTC ATAATTGAAG AAAATCAGGA AAGAATCTCA AACAGGGCAT
  CAACCTGGAA GCAGGAGTTA ATGCAGTGAT CACAGAGGGG TTCTGTTTAC CAGCTCACTC
  TCATAGCTTG TCCTACATTT TATAATTTTT ATTTTATATA ACTCAAGTCT GGTGTAGCAC
  Y
  GCCCACAATG GGCTGGGCCT CCATCAATCA CATATTAAGA AAAGTGCCTA CAAATTTGCC
  TATACCACAC TCATATGGAG GTACCTTTCT CCCAGATGAC TCTGCTATGT GCCAAGTTGA
  CTTAAAAATC ATTCATCAAA TATGAGGTTG GAAAGAGAAA GTCTAATGTT TTATGACCAA
  TGTGCCCAAA CATTGTTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss145607222	ENSMUSSNP5040383	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs45741644					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:141064677 () rs orientation: forward

Symbol	Name	Function Class
Rr419889	regulatory region 419889	219 bp proximal