rs45741947 SNP Detail

Summary

• ID
  rs45741947
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156265051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGGTAAG CAATGGTGGC
  AAATTAAGAC TTCAAAATGT GGCCAGAGCA TCCAGTGTCC CCACTGTCCC CAGGGGCCAC
  TCTGGAGAGT GCTAAACCAT TACAGTGTTT AGCATCAGGA GGAGGTTACC AATGACTTCA
  ACAATGGGTA TTTCAAGGTG ACACTGAGAG GTTACAGAGA AGTGAATAGA AAGAGGAAGA
  Y
  AGACGTGAAT GTGGACTTCC CACATTGGGG GAAGCAGACT TGAGCAGGAA GTGAAACTAG
  AAAGGCATCT CACTTGTGGG GCAGACTGAG AGACGGTGGA TGGGTGTGTG TATAGCTGAA
  TTCACAGGAA AACCAGGGAA CTAAAGGCAC TGACAGACAG CAGCTTCCTG CTTTCTCCTG
  ACTATCTATG TGGATGGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60329465	NES15835712	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45741947					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60329465	NES15835712	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156265051 () rs orientation: forward

Symbol	Name	Function Class
Rr13324	regulatory region 13324	451 bp distal
Rr31351	regulatory region 31351	within coordinates
Rr396421	regulatory region 396421	within coordinates
Soat1	sterol O-acyltransferase 1	within coordinates
Tssr14442	transcription start site region 14442	1828 bp downstream