rs45743418 SNP Detail

Summary

• ID
  rs45743418
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:66081542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCATGTGG ACACAGGTCT
  TATTCAAGAT CTCTTTTGTG TCAGTATCTC TCCTTGATTC AGCATCCAAG GACAGCCAGC
  TCTGTGTGGG CAGACTGAAG ACAGGCTACC CGACATTGCC TAGTCCCCAC ACAATACCGC
  CTCTATGCTC GGGTTTGCTT AGCTGACAAC TGTTAGACAC AGTTGCAGAC ACCTTGGCCA
  M
  ACCTCTTCCT GCCTTCCCTG GTACCTACGG GCTCCGTAAC AAGTAGGATC TGACCCTCTG
  TACTCAAGGG TGCCCCTTGT AAAGCTGAGG TATGTTTTCC TTTTATTACT TCCTGTGGAC
  TGAGGGTGAC TCATGGAACT GCAGGGCATG CTGACGAGCG TGGACTCTGC CCAGAAGGAC
  AAGCACAGAC AAAATGACCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62850152	NES17384788	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45743418					SNP	A	A	A	A	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62850152	NES17384788	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:66081542 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9418	CpG island 9418	1571 bp distal
Rab31	RAB31, member RAS oncogene family	1795 bp upstream
Rr392853	regulatory region 392853	1035 bp upstream
Rr529807	regulatory region 529807	1918 bp distal
Rr529808	regulatory region 529808	1994 bp distal
Rr529809	regulatory region 529809	1305 bp distal
Rr529810	regulatory region 529810	within coordinates
Rr529811	regulatory region 529811	844 bp distal
Rr529812	regulatory region 529812	639 bp distal
Tssr149074	transcription start site region 149074	1897 bp upstream
Tssr149075	transcription start site region 149075	1871 bp upstream
Tssr149076	transcription start site region 149076	1852 bp upstream