rs45744381 SNP Detail

Summary

• ID
  rs45744381
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113394959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G TCAGCAGTAG GTGCTTAGGG AGCATAGATG CTTGTAGCCC
  CACGTCAGAC AAAAGACTCT GGTAAGTAAG CATCTAGGGG CATAGATGGG GCAGGGTGAG
  T
  GGGGTGTGGG GGGAGGTGAC TATGGCCTGG GGACCTAGGG ACACAGAAAG GTGGGTGAAT
  AGGAAAGGTG GTGTCTGTGG CTTGGAGACC TGGGGACATG G                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss138742471	ENSMUSSNP2296567	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs45744381					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113394959 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	801 bp upstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	1506 bp upstream
Ighj2	immunoglobulin heavy joining 2	1824 bp upstream
Tssr115504	transcription start site region 115504	1099 bp downstream
Tssr118015	transcription start site region 118015	1991 bp upstream
Tssr118016	transcription start site region 118016	1837 bp upstream
Tssr118017	transcription start site region 118017	1497 bp upstream
Tssr118018	transcription start site region 118018	954 bp upstream
Tssr118019	transcription start site region 118019	898 bp upstream
Tssr118020	transcription start site region 118020	853 bp upstream
Tssr118021	transcription start site region 118021	736 bp upstream
Tssr118022	transcription start site region 118022	707 bp upstream
Tssr118023	transcription start site region 118023	544 bp upstream