rs45744853 SNP Detail

Summary

• ID
  rs45744853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:71955886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATC CAATCAAAGG ACTGACCTCT
  R
  CAAAGTCCAG ATTCGGGAAG CAATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61019291	NES16107375	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs45744853					SNP	A	A	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61019291	NES16107375	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:71955886 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19258	CpG island 19258	190 bp proximal
Gm39035	predicted gene, 39035	771 bp upstream
Mctp2	multiple C2 domains, transmembrane 2	within coordinates
Rr165673	regulatory region 165673	1906 bp proximal
Rr167990	regulatory region 167990	within coordinates
Rr171628	regulatory region 171628	1486 bp distal
Tssr67176	transcription start site region 67176	736 bp upstream
Tssr72929	transcription start site region 72929	462 bp downstream
Tssr72930	transcription start site region 72930	602 bp downstream