rs45745163 SNP Detail

Summary

• ID
  rs45745163
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135672846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACCCCCA GATGTGTTCT
  TTCTGTGCCA CTGCCAGAGA CAGGAAAATC CTGAGCTCCT TTCTGCCCTT CTGTTTCCTC
  TCCTATTGAG ACACATGGTC TCTCTATCAA AGGCAGAATG AAAAACTCCA TCTGGAGTTC
  TGAGGCTCAG GTCTGCCTAG GCTGTGGCTT CTGAACCTTG GGGCGCACTG AGACTTGGAG
  R
  GCTACCAGGG TACAGAGGTT TGAGGGAAAC ACCCCCAGAT TCCTGGAGGC CAGCCCACTG
  GCCACCCTGC TGGTCTCCTT TTCTGCATGA GTCAGTCTAG TCCTGGGAGG CCCCCAGCTG
  CATCTCACCA TCCCCCTGTC TCCTCCCCAG TGGTCTGCAA GAAGAATCTG GACAGCACCA
  CCGTGGCAGT GCATGGAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	WSB/EiJ
ss60803848	NES16474177	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	WSB/EiJ
rs45745163					SNP	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60803848	NES16474177	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135672846 () rs orientation: forward

Symbol	Name	Function Class
Csrp1	cysteine and glycine-rich protein 1	within coordinates
Rr419261	regulatory region 419261	822 bp distal
Rr419262	regulatory region 419262	1115 bp proximal
Tssr222	transcription start site region 222	1662 bp upstream