rs45745683 SNP Detail

Summary

• ID
  rs45745683
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118272009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAG CCTTCCTGTG TAAGCAGAGG
  Y
  CTGTATGTGA GGCCGTGTGG ACAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147300526	ENSMUSSNP6489727	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320469574	CHEV_2_118267264	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45745683					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118272009 () rs orientation: forward

Symbol	Name	Function Class
D2Mit276	DNA segment, Chr 2, Massachusetts Institute of Technology 276	539 bp proximal
Eif2ak4	eukaryotic translation initiation factor 2 alpha kinase 4	within coordinates
Rr45942	regulatory region 45942	within coordinates